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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21384396_21385921_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21384396 - 21385921
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CATTTCTGATTT
Flanking Amino Acid:
TKKGIGSHQSRSKICKVELF
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.2
0.81
0.8
86.8
25.8
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
52
0.14
1.7
69.34
42

Associated Gene:

Gene:
ADAT1
Ensembl Gene ID:
ENSAPLG00000012379
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012894
21373552 - 21392314
18763