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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21398931_21400950_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21398931 - 21400950
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGCTGTTTCATT
Flanking Amino Acid:
LFVDKTVPQSSLTMGQLYEK
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.2
0.52
1
71.3
33.4
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
45.9
-0.2
2.1
62.05
42.9

Associated Gene:

Gene:
GABARAPL2
Ensembl Gene ID:
ENSAPLG00000027980
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034349
21398840 - 21406731
7892