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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21401124_21406304_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21401124 - 21406304
Intron Length:
5181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTATATTTTACA
Flanking Amino Acid:
IRAKYPDRVPVIVEKVSGSQ
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
58.9
0.27
1.8
73.05
38.3

Associated Gene:

Gene:
GABARAPL2
Ensembl Gene ID:
ENSAPLG00000027980
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034349
21398840 - 21406731
7892