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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_21407615_21408613_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21407615 - 21408613
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGCGTA
5'SS Class:
major
3'SS Sequence:
CTGCTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ACCATTTTTACT
Flanking Amino Acid:
EDRLRVPLLSTREEDKNQDG
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
63.7
42.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.9
0.65
0.8
77.2
31.6
Minor 5ss
39
-1.2
3.7
55.1
49.1
Minor BPS
48.9
-0
1.6
61.72
42.4

Associated Gene:

Gene:
TMEM231
Ensembl Gene ID:
ENSAPLG00000012326
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012832
21407232 - 21412168
4937