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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2394095_2396424_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2394095 - 2396424
Intron Length:
2330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTATGTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTATGTAACT
Flanking Amino Acid:
FDRFISVTKAVSYRAQKGMT
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
70.8
39.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.6
0.64
0.9
76.4
37.4
Minor 5ss
32.3
-2
3.6
48.7
47
Minor BPS
51.7
0.13
2.2
74.95
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020084
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037519
2393602 - 2399153
5552