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Intron Name: Anas_platyrhynchos_platyrhynchos_12_2399048_2399802_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2399048 - 2399802

Intron Length:

755

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTTGTTC

5'SS Class:

weak_major

3'SS Sequence:

CATGTCTGTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TTGCTATTAACA

Flanking Amino Acid:

SPESEGPIYEEPC*

Intron Amino Acid Position:

828

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.1

0.19

1.3

59.4

40.4

Major BPS

81.9

0.79

0.8

81.9

Major PPT

72.4

0.5

69.3

41.4

Minor 5ss

42.9

-0.8

3.1

59.3

45.4

Minor BPS

0.43

1.6

73.79

37.6

Associated Gene:

Gene:

VPS35

Ensembl Gene ID:

ENSAPLG00000009261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046436

2399037 - 2416224

17188

ENSAPLT00000020989

2399037 - 2418470

19434