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Intron Name: Anas_platyrhynchos_platyrhynchos_12_2399969_2401275_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2399969 - 2401275

Intron Length:

1307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTTGA

5'SS Class:

major

3'SS Sequence:

TCTTCTCCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

TTGTCAATTACT

Flanking Amino Acid:

IYFYEKENEAVTIQVLNQLI

Intron Amino Acid Position:

709

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

65.2

37.3

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

82.2

0.72

0.7

77.8

24.1

Minor 5ss

36.3

-1.6

2.9

45.7

43.5

Minor BPS

50.3

0.09

2.2

78.69

42.9

Associated Gene:

Gene:

VPS35

Ensembl Gene ID:

ENSAPLG00000009261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046436

2399037 - 2416224

17188

ENSAPLT00000020989

2399037 - 2418470

19434

ENSAPLT00000009674

2399447 - 2416224

16778