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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2401420_2402135_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2401420 - 2402135
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACCT
Flanking Amino Acid:
GRNTDKNGEELHGGKRVMEC
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.4
0.73
0.8
74.6
36
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
67.4
0.62
1.6
82.67
39.4

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046436
2399037 - 2416224
17188
ENSAPLT00000020989
2399037 - 2418470
19434
ENSAPLT00000009674
2399447 - 2416224
16778