About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2402376_2403535_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2402376 - 2403535
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTCCTTTGACT
Flanking Amino Acid:
ETVAYEFMSQAFSLYEDEIS
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.4
0.37
1
61.9
38.7
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
74.6
0.86
1.2
84.49
36.3

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046436
2399037 - 2416224
17188
ENSAPLT00000020989
2399037 - 2418470
19434
ENSAPLT00000009674
2399447 - 2416224
16778