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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2403716_2404717_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2403716 - 2404717
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTGACTTATTT
Flanking Amino Acid:
AFRYKENSKVDDKWEKKCQK
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.3
0.73
0.7
81.3
30.6
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
59.1
0.36
1.9
80.67
41.5

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009674
2399447 - 2416224
16778
ENSAPLT00000046436
2399037 - 2416224
17188
ENSAPLT00000020989
2399037 - 2418470
19434