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Intron Name: Anas_platyrhynchos_platyrhynchos_12_2404841_2405610_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2404841 - 2405610

Intron Length:

770

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGGCAT

5'SS Class:

major

3'SS Sequence:

CTTCTGTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

AACTCTCTAAGC

Flanking Amino Acid:

RSDDPDQQYLILNTARKHFG

Intron Amino Acid Position:

480

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

41.6

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

82.2

0.72

0.8

80.5

31.5

Minor 5ss

38.7

-1.3

3.4

52.3

45.9

Minor BPS

48.4

-0.1

1.9

58.31

40.6

Associated Gene:

Gene:

VPS35

Ensembl Gene ID:

ENSAPLG00000009261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009674

2399447 - 2416224

16778

ENSAPLT00000046436

2399037 - 2416224

17188

ENSAPLT00000020989

2399037 - 2418470

19434