About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2406497_2407027_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2406497 - 2407027
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATTAACT
Flanking Amino Acid:
VEIFNKLNLEHIATSSAVSK
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
80
0.75
1
78.6
31
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
63.9
0.51
1.8
81.12
39.3

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046436
2399037 - 2416224
17188
ENSAPLT00000020989
2399037 - 2418470
19434
ENSAPLT00000009674
2399447 - 2416224
16778