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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2407369_2409891_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2407369 - 2409891
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CTATCCTGACCA
Flanking Amino Acid:
VKNIIIALIDRLALFAHRED
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
58
0.25
1.8
69.12
43

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046436
2399037 - 2416224
17188
ENSAPLT00000020989
2399037 - 2418470
19434
ENSAPLT00000009674
2399447 - 2416224
16778