Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2410002_2410473_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2410002 - 2410473

Intron Length:

472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCAAATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

AAGTTTATAACT

Flanking Amino Acid:

QEYLMECIIQVFPDEFHLQT

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

73.2

39.3

Major BPS

77.9

0.69

78.3

31.3

Major PPT

75.1

0.57

0.9

70.8

38.5

Minor 5ss

44.2

-0.6

2.9

59.3

45.5

Minor BPS

57.8

0.32

1.6

71.97

38.9

Associated Gene:

Gene:

VPS35

Ensembl Gene ID:

ENSAPLG00000009261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009674

2399447 - 2416224

16778

ENSAPLT00000046436

2399037 - 2416224

17188

ENSAPLT00000020989

2399037 - 2418470

19434