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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2410558_2411289_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2410558 - 2411289
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTA
Flanking Amino Acid:
EGVNVERYKQIVLPGILEQV
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.6
0.89
0.7
84.6
28.6
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
66.2
0.5
1.6
74.26
38.3

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020989
2399037 - 2418470
19434
ENSAPLT00000009674
2399447 - 2416224
16778
ENSAPLT00000046436
2399037 - 2416224
17188