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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2413429_2414258_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
2413429 - 2414258
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTAAGAGAAAAAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AAATCCTTAACT
Flanking Amino Acid:
MLSPKSYYELYMAISDELHY
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
44.6
-0.3
1.2
34.8
38.2
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
84.6
1.16
1
89.21
34.3

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046436
2399037 - 2416224
17188
ENSAPLT00000020989
2399037 - 2418470
19434
ENSAPLT00000009674
2399447 - 2416224
16778