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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2414356_2415733_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2414356 - 2415733
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
ACCTCCCATAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCT
Flanking Amino Acid:
MKRCLDKNKLMDALK
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.8
39.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
57.6
0.17
1.1
56.4
32.3
Minor 5ss
33.9
-1.8
2.9
39
40
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
VPS35
Ensembl Gene ID:
ENSAPLG00000009261
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009674
2399447 - 2416224
16778
ENSAPLT00000046436
2399037 - 2416224
17188
ENSAPLT00000020989
2399037 - 2418470
19434