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Intron Name: Anas_platyrhynchos_platyrhynchos_12_2415833_2418348_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2415833 - 2418348

Intron Length:

2516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGATTAT

5'SS Class:

major

3'SS Sequence:

TTTTTTCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

AGATGATAAAAA

Flanking Amino Acid:

SAVACWLRSRPTTQQSPQDE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.1

0.45

1.1

68.2

39.5

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

95.5

1.02

0.5

88.9

28.1

Minor 5ss

39.4

-1.2

3.3

48.2

47.9

Minor BPS

40.6

-0.7

2.2

50.17

40.2

Associated Gene:

Gene:

VPS35

Ensembl Gene ID:

ENSAPLG00000009261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020989

2399037 - 2418470

19434