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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2433730_2435149_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2433730 - 2435149
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TCCTTTCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTATGTTTACAT
Flanking Amino Acid:
FISRLLVKEKSCRMSATQCL
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.9
0.54
1
75.3
27.3
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
46.6
-0.1
2.1
65.31
45.4

Associated Gene:

Gene:
MYLK3
Ensembl Gene ID:
ENSAPLG00000009568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009967
2432191 - 2458338
26148