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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2435303_2436376_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2435303 - 2436376
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CCTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTTTTTTTAAG
Flanking Amino Acid:
MWSVGVITYMLLSGLSPFLG
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
72.7
38.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
80.9
0.7
0.9
86
25.7
Minor 5ss
37.6
-1.4
2.8
48.4
41.7
Minor BPS
49.8
-0.1
1.8
59.36
42.7

Associated Gene:

Gene:
MYLK3
Ensembl Gene ID:
ENSAPLG00000009568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009967
2432191 - 2458338
26148