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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2445986_2446977_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2445986 - 2446977
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATTC
Flanking Amino Acid:
TQTESKKPLEETKSVKKLNL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.2
0.81
0.8
85.4
34.3
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
56.1
0.17
1.5
63.44
37

Associated Gene:

Gene:
MYLK3
Ensembl Gene ID:
ENSAPLG00000009568
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009967
2432191 - 2458338
26148