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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2459614_2476799_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2459614 - 2476799
Intron Length:
17186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
ASAKKHEEERGYWSACYTTP
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.7
0.78
0.9
81.5
34.3
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
C16orf87
Ensembl Gene ID:
ENSAPLG00000009799
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030305
2459221 - 2482882
23662