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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2496007_2497499_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2496007 - 2497499
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTCTTGGCACT
Flanking Amino Acid:
GQRPITFLRQVVALCTYPNL
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
66
0.36
0.9
55.9
40
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
42.5
-0.5
2.4
69.31
42

Associated Gene:

Gene:
GPT2
Ensembl Gene ID:
ENSAPLG00000009804
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010249
2495917 - 2511670
15754