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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2497609_2501224_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2497609 - 2501224
Intron Length:
3616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTGTACTCAACT
Flanking Amino Acid:
ILQGCGGNSLGAYSASQGIN
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.6
0.82
0.7
82.5
26.2
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
67.9
0.64
1.7
85.62
40.3

Associated Gene:

Gene:
GPT2
Ensembl Gene ID:
ENSAPLG00000009804
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010249
2495917 - 2511670
15754