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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2503610_2504980_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2503610 - 2504980
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTAGT
5'SS Class:
major
3'SS Sequence:
AATCAAACTATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTGCTTTAAAA
Flanking Amino Acid:
LCIINPGNPTGQVQSRKCIE
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
74.4
41.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
58.3
0.19
1
49.1
38.3
Minor 5ss
39
-1.2
2.6
52.1
44.4
Minor BPS
65.1
0.47
1.5
71.99
40.5

Associated Gene:

Gene:
GPT2
Ensembl Gene ID:
ENSAPLG00000009804
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010249
2495917 - 2511670
15754