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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2505759_2506516_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2505759 - 2506516
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
GTTCACTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTCTGTTCACT
Flanking Amino Acid:
FHSTSKGYMGECGYRGGYME
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.4
45.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
68.3
0.41
0.8
61.8
34.6
Minor 5ss
39.1
-1.2
3
46.9
42.4
Minor BPS
50.6
0.1
2.4
80.65
41.4

Associated Gene:

Gene:
GPT2
Ensembl Gene ID:
ENSAPLG00000009804
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010249
2495917 - 2511670
15754