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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2508821_2510019_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2508821 - 2510019
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TATTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAATA
Flanking Amino Acid:
FGQREGSYHFRMTILPPIEK
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.5
0.84
0.8
85.1
34.8
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
65.4
0.48
1.6
74.1
38.6

Associated Gene:

Gene:
GPT2
Ensembl Gene ID:
ENSAPLG00000009804
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010249
2495917 - 2511670
15754