About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2514311_2514813_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2514311 - 2514813
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTGTTTTAAAG
Flanking Amino Acid:
ALFLRDFEQQAKESIREMKK
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
49
41.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
81
0.7
1
82.2
33.3
Minor 5ss
29.2
-2.4
3.4
30.7
42.7
Minor BPS
62.1
0.24
1.6
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010106
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010522
2514181 - 2521888
7708