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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2514943_2515947_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2514943 - 2515947
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GCTTGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
AGTATATGAACA
Flanking Amino Acid:
IRKMKRKDLLNLQGREEVAL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.3
37.6
Major BPS
66.7
0.41
1
57.8
39
Major PPT
75.4
0.57
1
67.8
42.5
Minor 5ss
41.2
-1
2.8
53.2
38.8
Minor BPS
48.9
-0
1.7
61.73
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010106
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044269
2514584 - 2522733
8150