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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2514953_2516313_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2514953 - 2516313
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGATCAAA
5'SS Class:
weak_major
3'SS Sequence:
ACATTTTGTAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
AACTATTGACCT
Flanking Amino Acid:
MKRKDLLSKYVDSSLEDVPN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.1
56
38.5
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
51.9
0.04
1.8
60.8
44
Minor 5ss
35.3
-1.7
2.9
40.4
45.5
Minor BPS
45.8
-0.2
1.8
61.28
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010106
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010522
2514181 - 2521888
7708