Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2521432_2521666_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2521432 - 2521666

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCAAAC

5'SS Class:

major

3'SS Sequence:

TCTTCATGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTCATCTTAAAA

Flanking Amino Acid:

FVNIPLADGQTLCMAGGDLR

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.2

67.7

37.5

Major BPS

100

1.24

0.5

100

Major PPT

75.1

0.56

0.9

73.9

35.7

Minor 5ss

45.4

-0.5

2.7

60.5

44.2

Minor BPS

66.6

0.52

1.4

72.98

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010106

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044269

2514584 - 2522733

8150

ENSAPLT00000010522

2514181 - 2521888

7708