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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2521768_2521839_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2521768 - 2521839
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAGGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTATAGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTATAGATT
Flanking Amino Acid:
HIHNLVVSLNHSKCIILWGL
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.1
63.8
43.3
Major BPS
100
1.24
0.5
100
0
Major PPT
74.9
0.56
1
70.8
43.8
Minor 5ss
52.1
0.07
3.1
78.1
37.7
Minor BPS
45.8
-0.2
1.9
62.65
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010106
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010522
2514181 - 2521888
7708