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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2528810_2528982_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2528810 - 2528982
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTCTTTGAATT
Flanking Amino Acid:
KYPPGKVIEPGCVRVVRGEG
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.5
0.62
0.9
69.9
39.4
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
58.6
0.35
1.4
73.39
38.1

Associated Gene:

Gene:
DNAJA2
Ensembl Gene ID:
ENSAPLG00000010151
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010596
2527977 - 2538001
10025