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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2529128_2530721_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2529128 - 2530721
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TCCCTCATAATT
Flanking Amino Acid:
VLLLQEKENEVFQRDGNDLH
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
54.7
0.23
1.6
69.5
41.9

Associated Gene:

Gene:
DNAJA2
Ensembl Gene ID:
ENSAPLG00000010151
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010596
2527977 - 2538001
10025