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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2533017_2534388_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2533017 - 2534388
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
RRGEDMMHPLKVSLEDLYNG
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
DNAJA2
Ensembl Gene ID:
ENSAPLG00000010151
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010596
2527977 - 2538001
10025