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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2575147_2577787_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2575147 - 2577787
Intron Length:
2641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
GCTCTCATAATC
Flanking Amino Acid:
AYPWDENHCRERKKAGLFEQ
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
85.6
24.7
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
33.2
-1.9
2.9
41.8
44.8
Minor BPS
52.5
0.06
1.6
61.1
38.2

Associated Gene:

Gene:
NETO2
Ensembl Gene ID:
ENSAPLG00000010563
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022381
2574566 - 2588325
13760