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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2609223_2610602_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2609223 - 2610602
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCAATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGATTTTTACCT
Flanking Amino Acid:
IIGILHWQEKKKWLRYSVRK
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.6
0.51
0.8
69.5
35.4
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
62.5
0.47
1.6
76.8
39.9

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023391
2608926 - 2675570
66645