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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2610721_2612329_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2610721 - 2612329
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCCTTGGATT
Flanking Amino Acid:
VIPYPHNVPRSWSAKLYLTP
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.8
0.65
0.8
75.5
33.1
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
63
0.49
1.4
81.17
34.3

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038371
2606810 - 2675570
68761
ENSAPLT00000025969
2607146 - 2675570
68425
ENSAPLT00000023391
2608926 - 2675570
66645
ENSAPLT00000048217
2607146 - 2675570
68425
ENSAPLT00000011110
2607146 - 2678119
70974
ENSAPLT00000044502
2609945 - 2675570
65626