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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2613351_2620770_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2613351 - 2620770
Intron Length:
7420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTAACTTGAATT
Flanking Amino Acid:
DANGYLKNGSAGQLSQSAHF
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.9
0.7
0.9
74.8
38.9
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
57.3
0.31
1.5
70.3
40.9

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023391
2608926 - 2675570
66645
ENSAPLT00000011110
2607146 - 2678119
70974
ENSAPLT00000044502
2609945 - 2675570
65626
ENSAPLT00000038371
2606810 - 2675570
68761
ENSAPLT00000025969
2607146 - 2675570
68425