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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_26215_27585_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26215 - 27585
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTATTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGCGTTTATTT
Flanking Amino Acid:
VNFCEDTAKIVPAQRWDNAA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.1
0.74
0.8
77.2
36.9
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
48.4
-0
2
68.58
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640