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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2625904_2626385_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2625904 - 2626385
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTAATTTAAAC
Flanking Amino Acid:
VATFFDIYEDGILDIIVVSK
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.6
0.8
0.6
78.7
30.2
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
55.3
0.14
1.7
65.31
40

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023391
2608926 - 2675570
66645
ENSAPLT00000048217
2607146 - 2675570
68425
ENSAPLT00000011110
2607146 - 2678119
70974
ENSAPLT00000044502
2609945 - 2675570
65626
ENSAPLT00000038371
2606810 - 2675570
68761
ENSAPLT00000025969
2607146 - 2675570
68425