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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2641017_2654560_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2641017 - 2654560
Intron Length:
13544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TACACATTGACC
Flanking Amino Acid:
IVGQSVFADFDGDGQSEHLL
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
78.7
31.6
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
86
0.81
0.9
84.5
30.4
Minor 5ss
39.8
-1.1
3
53.4
43.8
Minor BPS
56
0.17
1.7
64.96
40.4

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025969
2607146 - 2675570
68425
ENSAPLT00000023391
2608926 - 2675570
66645
ENSAPLT00000048217
2607146 - 2675570
68425
ENSAPLT00000011110
2607146 - 2678119
70974
ENSAPLT00000044502
2609945 - 2675570
65626
ENSAPLT00000038371
2606810 - 2675570
68761