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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2654646_2656508_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2654646 - 2656508
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTCAT
U12 Branch Point Sequence:
TCTTCGTCATCT
Flanking Amino Acid:
SIQFETWVNKDGNFSRAGKS
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
72.2
0.55
1.2
73.6
41.8
Major PPT
74.4
0.55
1
72.1
38
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
48.6
-0
2.4
75.91
46.6

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025969
2607146 - 2675570
68425
ENSAPLT00000023391
2608926 - 2675570
66645
ENSAPLT00000048217
2607146 - 2675570
68425
ENSAPLT00000011110
2607146 - 2678119
70974
ENSAPLT00000044502
2609945 - 2675570
65626
ENSAPLT00000038371
2606810 - 2675570
68761