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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2672150_2673138_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2672150 - 2673138
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
KTFHDEPLVMDFNGDLIPDI
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
91.2
0.93
0.7
89.3
26.1
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038371
2606810 - 2675570
68761
ENSAPLT00000023391
2608926 - 2675570
66645
ENSAPLT00000011110
2607146 - 2678119
70974
ENSAPLT00000048217
2607146 - 2675570
68425
ENSAPLT00000044502
2609945 - 2675570
65626