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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2675016_2675397_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2675016 - 2675397
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACTT
Flanking Amino Acid:
YFKPRVKLPMKSLGVVITSV
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.8
0.7
78.7
34.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
63.3
0.5
1.6
78.42
39.1

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025969
2607146 - 2675570
68425
ENSAPLT00000023391
2608926 - 2675570
66645
ENSAPLT00000048217
2607146 - 2675570
68425
ENSAPLT00000011110
2607146 - 2678119
70974
ENSAPLT00000044502
2609945 - 2675570
65626
ENSAPLT00000038371
2606810 - 2675570
68761