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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2675471_2677887_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2675471 - 2677887
Intron Length:
2417

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAC
U12 Branch Point Sequence:
GTTGTCTTACTT
Flanking Amino Acid:
HLENCFRWNSGNELIIFLAD
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
76.4
38.8
Major BPS
64.7
0.37
1.1
67.2
35.2
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
24.9
-2.9
3.6
30.1
36.9
Minor BPS
59
0.36
1.7
75.64
41.8

Associated Gene:

Gene:
ITFG1
Ensembl Gene ID:
ENSAPLG00000010587
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011110
2607146 - 2678119
70974