About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2679878_2685919_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2679878 - 2685919
Intron Length:
6042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATCCTGATCT
Flanking Amino Acid:
TSSAHAFLKFGSIYEPLKSI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
62.9
0.48
1.7
79.61
41.6

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000042937
2679511 - 2753671
74161
ENSAPLT00000021534
2679511 - 2752789
73279
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000029386
2679511 - 2750499
70989
ENSAPLT00000026761
2679511 - 2754688
75178