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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2684156_2685919_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2684156 - 2685919
Intron Length:
1764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATCCTGATCT
Flanking Amino Acid:
FLKFEGHRLSGSIYEPLKSI
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
62.9
0.48
1.7
79.61
41.6

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000045950
2679511 - 2752789
73279