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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2687733_2693689_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2687733 - 2693689
Intron Length:
5957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAACC
Flanking Amino Acid:
ACSWALALAYRRIDDDKGRT
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.7
32.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76
0.58
0.9
70.7
38.9
Minor 5ss
29.5
-2.3
2.8
35.9
41.1
Minor BPS
84.8
1.07
1
85.68
32.7

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032847
2679511 - 2753671
74161
ENSAPLT00000029733
2677355 - 2753671
76317
ENSAPLT00000029386
2679511 - 2750499
70989
ENSAPLT00000025977
2679511 - 2753671
74161
ENSAPLT00000042937
2679511 - 2753671
74161