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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_2692692_2693689_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2692692 - 2693689
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACTGACG
5'SS Class:
weak_major
3'SS Sequence:
CTTTCTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAACC
Flanking Amino Acid:
VYCRLNFQCCMRIDDDKGRT
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.17
1.2
53
43.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76
0.58
0.9
70.7
38.9
Minor 5ss
34
-1.8
3.4
45
43
Minor BPS
84.8
1.07
1
85.68
32.7

Associated Gene:

Gene:
PHKB
Ensembl Gene ID:
ENSAPLG00000011023
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011611
2677355 - 2752789
75435
ENSAPLT00000045950
2679511 - 2752789
73279
ENSAPLT00000032239
2682921 - 2752789
69869
ENSAPLT00000026761
2679511 - 2754688
75178
ENSAPLT00000021534
2679511 - 2752789
73279